PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.21102s0003.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 316aa    MW: 36951.7 Da    PI: 4.3468
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.21102s0003.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.15.2e-1472156286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           W +qe  +L+e+  ++  +l+r++l+  +W ev++k+ +e  +e+s +qC+  ++nl+++y+k+k   +k +   ss++++f++l+
  Cagra.21102s0003.2.p  72 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVcEELRMEKSETQCRRMIDNLKRKYRKEKIKVEK-SGLGSSKWAFFNKLD 156
                           **********************************9877999***********************977776.478999*******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-1971157No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MYSRPIPKRH AYYHEEEDEQ EEDEVEGDDE EPQGGGYSRG NERFQKRQKP NKPVVSGYDF  60
AGPSDGKVKY DWREQEAFVL LEVWGDRFLQ LGRRSLRNED WNEVAEKVCE ELRMEKSETQ  120
CRRMIDNLKR KYRKEKIKVE KSGLGSSKWA FFNKLDMLLC VSPKSDLGLA CGVDSGEFVF  180
MNTKVYLDKS NGFDEMMDSP GDSEEEEDDE EEVDYERKKF NDAASYKMLA DSVEKFGKIY  240
EKMEKSKKEQ MKELEKMRAD FQKDLELQKK QIVDRAQSEI ARLREEEENN HGDAGDDESE  300
DEEMENDSDV NLSDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207460.0AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298066.10.0hypothetical protein CARUB_v10014110mg
TrEMBLR0HMM00.0R0HMM0_9BRAS; Uncharacterized protein
STRINGscaffold_302996.11e-179(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-149Trihelix family protein